sessionInfo # R version 4.4.2 (2024-10-31) # Platform: x86_64-pc-linux-gnu # Running under: Ubuntu 20.04.6 LTS # # Matrix products: default # BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0 # LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0 # # locale: # [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C # [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 # [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 # [7] LC_PAPER=en_US.UTF-8 LC_NAME=C # [9] LC_ADDRESS=C LC_TELEPHONE=C # [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C # # time zone: Asia/Shanghai # tzcode source: system (glibc) # # attached base packages: # [1] grid splines stats4 stats graphics grDevices utils # [8] datasets methods base # # other attached packages: # [1] velocyto.R_0.6 ggpubr_0.5.0 # [3] paletteer_1.6.0 clustree_0.5.1 # [5] ggraph_2.1.0 openxlsx_4.2.7.1 # [7] hdf5r_1.3.11 scater_1.26.1 # [9] scran_1.26.0 scuttle_1.8.0 # [11] tradeSeq_1.20.0 mclust_6.1.1 # [13] uwot_0.1.14 slingshot_2.6.0 # [15] TrajectoryUtils_1.6.0 princurve_2.1.6 # [17] RColorBrewer_1.1-3 forcats_1.0.0 # [19] stringr_1.5.1 purrr_1.0.2 # [21] readr_2.1.5 tidyr_1.3.1 # [23] tibble_3.2.1 tidyverse_1.3.2 # [25] org.Ce.eg.db_3.20.0 tidyselect_1.2.1 # [27] monocle3_1.3.7 SingleCellExperiment_1.20.0 # [29] SummarizedExperiment_1.28.0 GenomicRanges_1.50.1 # [31] GenomeInfoDb_1.34.3 MatrixGenerics_1.18.1 # [33] matrixStats_1.5.0 scales_1.3.0 # [35] org.Hs.eg.db_3.16.0 AnnotationDbi_1.68.0 # [37] IRanges_2.32.0 S4Vectors_0.36.0 # [39] clusterProfiler_4.6.0 ComplexHeatmap_2.14.0 # [41] circlize_0.4.16 ggsci_3.2.0 # [43] patchwork_1.3.0 dplyr_1.1.4 # [45] Seurat_5.0.3 SeuratObject_5.0.1 # [47] sp_2.1-4 monocle_2.34.0 # [49] DDRTree_0.1.5 irlba_2.3.5.1 # [51] VGAM_1.1-12 ggplot2_3.5.1 # [53] Biobase_2.66.0 BiocGenerics_0.52.0 # [55] Matrix_1.7-1 # # loaded via a namespace (and not attached): # [1] igraph_2.0.1.1 ica_1.0-3 # [3] plotly_4.10.1 rematch2_2.1.2 # [5] zlibbioc_1.52.0 rvest_1.0.3 # [7] bit_4.5.0.1 doParallel_1.0.17 # [9] clue_0.3-66 lattice_0.22-6 # 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